Spike detection- Threshold
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Spike detection- Threshold
Hello,
I'm trying to detect spikes from an acute hippocampal slices using spike sorter function in MC_Rack.
I used the threshold- amplitude method. The problem is, I can only put threshold either + or - value. So if I set the threshold as -20 uV, it detects negative spikes but not positive. And vice versa.
Extracellular recording signals are mostly mixed with negative and positive, and there are so many spikes in my data that I can't perform the two functions separately.
Are there ways to set threshold for both shape? Or, did I overlook the function in MC_Rack?
Best regards,
Seon-Ah
I'm trying to detect spikes from an acute hippocampal slices using spike sorter function in MC_Rack.
I used the threshold- amplitude method. The problem is, I can only put threshold either + or - value. So if I set the threshold as -20 uV, it detects negative spikes but not positive. And vice versa.
Extracellular recording signals are mostly mixed with negative and positive, and there are so many spikes in my data that I can't perform the two functions separately.
Are there ways to set threshold for both shape? Or, did I overlook the function in MC_Rack?
Best regards,
Seon-Ah
sahch- Posts : 4
Join date : 2009-08-12
Re: Spike detection- Threshold
Dear Seon-Ah,
using the threshold function you can ideed only determine one threshold level - be it positive or negative. However, you might want to use the Stddev method. it will detect any spike exceeeding noise level by a certain number of standard deviations. Also the slope based detection will get you positive and negative deflections.
Greetings
Thomas
using the threshold function you can ideed only determine one threshold level - be it positive or negative. However, you might want to use the Stddev method. it will detect any spike exceeeding noise level by a certain number of standard deviations. Also the slope based detection will get you positive and negative deflections.
Greetings
Thomas
Thomas- Posts : 49
Join date : 2008-06-03
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